3D structure

PDB id
9NJV (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex (bL33 absent)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGAAG*UUGAC*GGU*AGG
Length
16 nucleotides
Bulged bases
9NJV|1|R1|A|2288
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9NJV_009 not in the Motif Atlas
Homologous match to J4_5J7L_027
Geometric discrepancy: 0.1528
The information below is about J4_5J7L_027
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

9NJV|1|R1|C|2285
9NJV|1|R1|G|2286
9NJV|1|R1|A|2287
9NJV|1|R1|A|2288
9NJV|1|R1|G|2289
*
9NJV|1|R1|U|2343
9NJV|1|R1|U|2344
9NJV|1|R1|G|2345
9NJV|1|R1|A|2346
9NJV|1|R1|C|2347
*
9NJV|1|R1|G|2370
9NJV|1|R1|G|2371
9NJV|1|R1|U|2372
*
9NJV|1|R1|A|2381
9NJV|1|R1|G|2382
9NJV|1|R1|G|2383

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 18
Large ribosomal subunit protein uL18
Chain 27
Large ribosomal subunit protein bL27
Chain 35
Large ribosomal subunit protein bL35

Coloring options:


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