J4_9OFV_002

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OFV|1|f|C|185
9OFV|1|f|U|186
9OFV|1|f|A|187
9OFV|1|f|U|188
9OFV|1|f|G|189
*
9OFV|1|f|C|205
9OFV|1|f|G|206
9OFV|1|f|U|207
9OFV|1|f|C|208
*
9OFV|1|f|G|212
9OFV|1|f|A|213
9OFV|1|f|G|214
*
9OFV|1|f|C|226
9OFV|1|f|G|227
9OFV|1|f|U|228
9OFV|1|f|G|229
9OFV|1|f|U|230
9OFV|1|f|G|231

Current chains

Chain f

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L26-A

Chain i

5.8S ribosomal RNA; 5.8S rRNA

Chain l

Large ribosomal subunit protein uL4A