J4_9OFV_005

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9OFV_005 not in the Motif Atlas

Homologous match to J4_9AXU_006

Geometric discrepancy: 0.1339

The information below is about J4_9AXU_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9OFV|1|f|G|1674
9OFV|1|f|G|1675
*
9OFV|1|f|C|1693
9OFV|1|f|U|1694
*
9OFV|1|f|A|1752
9OFV|1|f|G|1753
*
9OFV|1|f|U|1772
9OFV|1|f|C|1773

Current chains

Chain f

25S rRNA

Nearby chains

Chain 8

60S ribosomal protein L22-A

Chain T

60S ribosomal protein L34-A

Chain X

Large ribosomal subunit protein eL38