J4_9OFV_008

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CUAAG*UUGAU*ACC*GUG

Length

16 nucleotides

Bulged bases

9OFV|1|f|A|2657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OFV|1|f|C|2654
9OFV|1|f|U|2655
9OFV|1|f|A|2656
9OFV|1|f|A|2657
9OFV|1|f|G|2658
*
9OFV|1|f|U|2712
9OFV|1|f|U|2713
9OFV|1|f|G|2714
9OFV|1|f|A|2715
9OFV|1|f|U|2716
*
9OFV|1|f|A|2740
9OFV|1|f|C|2741
9OFV|1|f|C|2742
*
9OFV|1|f|G|2751
9OFV|1|f|U|2752
9OFV|1|f|G|2753

Current chains

Chain f

25S rRNA

Nearby chains

Chain 7

60S ribosomal protein L21-A

Chain O

Large ribosomal subunit protein eL29

Chain b

60S ribosomal protein L42-A

Chain m

Large ribosomal subunit protein uL18