J4_9OJM_004
3D structure
- PDB id
- 9OJM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial 28S PIC with tRNA and mtIF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GAG*CAAUAG*CCCUAAACCUCA*UC
- Length
- 23 nucleotides
- Bulged bases
- 9OJM|1|A|A|942, 9OJM|1|A|A|1103, 9OJM|1|A|C|1106, 9OJM|1|A|C|1108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9OJM_004 not in the Motif Atlas
- Homologous match to J4_6CZR_013
- Geometric discrepancy: 0.2505
- The information below is about J4_6CZR_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.5
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9OJM|1|A|G|941
9OJM|1|A|A|942
9OJM|1|A|G|943
*
9OJM|1|A|C|1052
9OJM|1|A|A|1053
9OJM|1|A|A|1054
9OJM|1|A|U|1055
9OJM|1|A|A|1056
9OJM|1|A|G|1057
*
9OJM|1|A|C|1098
9OJM|1|A|C|1099
9OJM|1|A|C|1100
9OJM|1|A|U|1101
9OJM|1|A|A|1102
9OJM|1|A|A|1103
9OJM|1|A|A|1104
9OJM|1|A|C|1105
9OJM|1|A|C|1106
9OJM|1|A|U|1107
9OJM|1|A|C|1108
9OJM|1|A|A|1109
*
9OJM|1|A|U|1132
9OJM|1|A|C|1133
Current chains
- Chain A
- 12S mitochondrial RNA
Nearby chains
- Chain 2
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1
- Chain 3
- Small ribosomal subunit protein mS38
- Chain J
- 28S ribosomal protein S12, mitochondrial
- Chain L
- Small ribosomal subunit protein uS15m
- Chain N
- Small ribosomal subunit protein uS17m
- Chain Q
- 28S ribosomal protein S21, mitochondrial
- Chain T
- Small ribosomal subunit protein mS25
Coloring options: