J4_9QIW_001

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9QIW|1|L5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9QIW_001 not in the Motif Atlas

Homologous match to J4_8P9A_012

Geometric discrepancy: 0.1267

The information below is about J4_8P9A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

9QIW|1|L5|C|111
9QIW|1|L5|C|112
*
9QIW|1|L5|G|278
9QIW|1|L5|A|279
9QIW|1|L5|G|280
9QIW|1|L5|U|281
9QIW|1|L5|C|282
9QIW|1|L5|G|283
*
9QIW|1|L5|C|304
9QIW|1|L5|A|305
9QIW|1|L5|A|306
9QIW|1|L5|A|307
9QIW|1|L5|G|308
9QIW|1|L5|C|309
9QIW|1|L5|G|310
*
9QIW|1|L5|U|327
9QIW|1|L5|A|328
9QIW|1|L5|A|329
9QIW|1|L5|G|330

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Li

60S ribosomal protein L36