J4_9R9O_006

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9R9O_006 not in the Motif Atlas

Homologous match to J4_9AXU_006

Geometric discrepancy: 0.1674

The information below is about J4_9AXU_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9R9O|1|C1|G|1674
9R9O|1|C1|G|1675
*
9R9O|1|C1|C|1693
9R9O|1|C1|U|1694
*
9R9O|1|C1|A|1752
9R9O|1|C1|G|1753
*
9R9O|1|C1|U|1772
9R9O|1|C1|C|1773

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LU

60S ribosomal protein L22-A

Chain Lg

60S ribosomal protein L34-A

Chain Lk

60S ribosomal protein L38