J4_9RVC_003
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 9RVC|1|A|C|584, 9RVC|1|A|A|823
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9RVC_003 not in the Motif Atlas
- Homologous match to J4_6CZR_013
- Geometric discrepancy: 0.108
- The information below is about J4_6CZR_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.5
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9RVC|1|A|G|583
9RVC|1|A|C|584
9RVC|1|A|G|585
*
9RVC|1|A|C|772
9RVC|1|A|G|773
9RVC|1|A|A|774
9RVC|1|A|A|775
9RVC|1|A|A|776
9RVC|1|A|G|777
*
9RVC|1|A|C|818
9RVC|1|A|C|819
9RVC|1|A|G|820
9RVC|1|A|U|821
9RVC|1|A|A|822
9RVC|1|A|A|823
9RVC|1|A|A|824
9RVC|1|A|C|825
9RVC|1|A|G|826
9RVC|1|A|A|827
9RVC|1|A|U|828
9RVC|1|A|G|829
*
9RVC|1|A|C|889
9RVC|1|A|C|890
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain H
- Small ribosomal subunit protein uS8
- Chain L
- Small ribosomal subunit protein uS12
- Chain O
- Small ribosomal subunit protein uS15
- Chain Q
- Small ribosomal subunit protein uS17
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: