J4_9RVC_009
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAAG*CC*GAGC*GG
- Length
- 14 nucleotides
- Bulged bases
- 9RVC|1|a|G|1309, 9RVC|1|a|A|1310, 9RVC|1|a|A|1312, 9RVC|1|a|G|1691
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9RVC_009 not in the Motif Atlas
- Homologous match to J4_7A0S_004
- Geometric discrepancy: 0.4259
- The information below is about J4_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_19484.1
- Basepair signature
- cWW-F-cWW-F-tSS-F-cWW-F-cWW
- Number of instances in this motif group
- 8
Unit IDs
9RVC|1|a|C|1308
9RVC|1|a|G|1309
9RVC|1|a|A|1310
9RVC|1|a|A|1311
9RVC|1|a|A|1312
9RVC|1|a|G|1313
*
9RVC|1|a|C|1331
9RVC|1|a|C|1332
*
9RVC|1|a|G|1689
9RVC|1|a|A|1690
9RVC|1|a|G|1691
9RVC|1|a|C|1692
*
9RVC|1|a|G|2036
9RVC|1|a|G|2037
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain m
- Large ribosomal subunit protein bL17
- Chain r
- Large ribosomal subunit protein uL22
- Chain z
- Large ribosomal subunit protein bL32
Coloring options: