J4_9T4R_005

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

9T4R|1|a|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9T4R_005 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.191

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9T4R|1|a|C|271
9T4R|1|a|C|272
*
9T4R|1|a|G|416
9T4R|1|a|A|417
9T4R|1|a|G|418
9T4R|1|a|U|419
9T4R|1|a|A|420
9T4R|1|a|C|421
*
9T4R|1|a|G|445
9T4R|1|a|G|446
9T4R|1|a|A|447
9T4R|1|a|A|448
9T4R|1|a|U|449
9T4R|1|a|C|450
9T4R|1|a|U|451
9T4R|1|a|G|452
*
9T4R|1|a|U|467
9T4R|1|a|A|468
9T4R|1|a|A|469
9T4R|1|a|G|470

Current chains

Chain a

23S rRNA

Nearby chains

Chain w

Large ribosomal subunit protein bL28