J4_9T4R_014
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CAAAG*UUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 9T4R|1|a|A|2313
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9T4R_014 not in the Motif Atlas
- Homologous match to J4_7A0S_009
- Geometric discrepancy: 0.2317
- The information below is about J4_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9T4R|1|a|C|2310
9T4R|1|a|A|2311
9T4R|1|a|A|2312
9T4R|1|a|A|2313
9T4R|1|a|G|2314
*
9T4R|1|a|U|2368
9T4R|1|a|U|2369
9T4R|1|a|G|2370
9T4R|1|a|A|2371
9T4R|1|a|C|2372
*
9T4R|1|a|G|2395
9T4R|1|a|G|2396
9T4R|1|a|G|2397
*
9T4R|1|a|C|2406
9T4R|1|a|G|2407
9T4R|1|a|G|2408
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL33B
- Chain 2
- Large ribosomal subunit protein bL35
- Chain v
- Large ribosomal subunit protein bL27
Coloring options: