J4_9TZ5_001

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CC*GAGUAG*UGAACAUG*CAAG

Length

20 nucleotides

Bulged bases

9TZ5|1|a|U|410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9TZ5_001 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2098

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9TZ5|1|a|C|272
9TZ5|1|a|C|273
*
9TZ5|1|a|G|375
9TZ5|1|a|A|376
9TZ5|1|a|G|377
9TZ5|1|a|U|378
9TZ5|1|a|A|379
9TZ5|1|a|G|380
*
9TZ5|1|a|U|404
9TZ5|1|a|G|405
9TZ5|1|a|A|406
9TZ5|1|a|A|407
9TZ5|1|a|C|408
9TZ5|1|a|A|409
9TZ5|1|a|U|410
9TZ5|1|a|G|411
*
9TZ5|1|a|C|426
9TZ5|1|a|A|427
9TZ5|1|a|A|428
9TZ5|1|a|G|429

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 9

Large ribosomal subunit protein bL28

Chain q

Large ribosomal subunit protein bL9