J4_9W0N_008
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 9W0N|1|1|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9W0N_008 not in the Motif Atlas
- Homologous match to J4_8B0X_013
- Geometric discrepancy: 0.1315
- The information below is about J4_8B0X_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9W0N|1|1|C|2285
9W0N|1|1|G|2286
9W0N|1|1|A|2287
9W0N|1|1|A|2288
9W0N|1|1|G|2289
*
9W0N|1|1|U|2343
9W0N|1|1|U|2344
9W0N|1|1|G|2345
9W0N|1|1|A|2346
9W0N|1|1|C|2347
*
9W0N|1|1|G|2370
9W0N|1|1|G|2371
9W0N|1|1|U|2372
*
9W0N|1|1|A|2381
9W0N|1|1|G|2382
9W0N|1|1|G|2383
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein bL33
- Chain E
- Large ribosomal subunit protein bL35
- Chain o
- Large ribosomal subunit protein uL18
- Chain w
- Large ribosomal subunit protein bL27
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