J4_9WNQ_007

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9WNQ|1|b|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9WNQ_007 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2139

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

9WNQ|1|b|C|268
9WNQ|1|b|C|269
*
9WNQ|1|b|G|370
9WNQ|1|b|A|371
9WNQ|1|b|G|372
9WNQ|1|b|U|373
9WNQ|1|b|A|374
9WNQ|1|b|G|375
*
9WNQ|1|b|U|399
9WNQ|1|b|G|400
9WNQ|1|b|A|401
9WNQ|1|b|A|402
9WNQ|1|b|U|403
9WNQ|1|b|A|404
9WNQ|1|b|U|405
9WNQ|1|b|G|406
*
9WNQ|1|b|C|421
9WNQ|1|b|A|422
9WNQ|1|b|A|423
9WNQ|1|b|G|424

Current chains

Chain b

23S ribosomal RNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL28

Chain h

50S ribosomal protein L9