J4_9WNQ_010
3D structure
- PDB id
- 9WNQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CGAUAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 9WNQ|1|b|G|1271, 9WNQ|1|b|A|1272, 9WNQ|1|b|U|1273, 9WNQ|1|b|A|1275, 9WNQ|1|b|U|1647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9WNQ_010 not in the Motif Atlas
- Homologous match to J4_7A0S_004
- Geometric discrepancy: 0.1388
- The information below is about J4_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
9WNQ|1|b|C|1270
9WNQ|1|b|G|1271
9WNQ|1|b|A|1272
9WNQ|1|b|U|1273
9WNQ|1|b|A|1274
9WNQ|1|b|A|1275
9WNQ|1|b|A|1276
*
9WNQ|1|b|U|1294
9WNQ|1|b|C|1295
*
9WNQ|1|b|G|1645
9WNQ|1|b|C|1646
9WNQ|1|b|U|1647
9WNQ|1|b|U|1648
*
9WNQ|1|b|A|2009
9WNQ|1|b|G|2010
Current chains
- Chain b
- 23S ribosomal RNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL32
- Chain o
- Large ribosomal subunit protein bL17
- Chain t
- 50S ribosomal protein L22
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