J4_9Y79_005

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

9Y79|1|D|C|576, 9Y79|1|D|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Y79_005 not in the Motif Atlas

Homologous match to J4_6CZR_013

Geometric discrepancy: 0.1175

The information below is about J4_6CZR_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.5

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9Y79|1|D|G|575
9Y79|1|D|C|576
9Y79|1|D|G|577
*
9Y79|1|D|C|764
9Y79|1|D|G|765
9Y79|1|D|A|766
9Y79|1|D|A|767
9Y79|1|D|A|768
9Y79|1|D|G|769
*
9Y79|1|D|C|810
9Y79|1|D|C|811
9Y79|1|D|G|812
9Y79|1|D|U|813
9Y79|1|D|A|814
9Y79|1|D|A|815
9Y79|1|D|A|816
9Y79|1|D|C|817
9Y79|1|D|G|818
9Y79|1|D|A|819
9Y79|1|D|U|820
9Y79|1|D|G|821
*
9Y79|1|D|C|879
9Y79|1|D|C|880

Current chains

Chain D

16S rRNA

Nearby chains

Chain F

Small ribosomal subunit protein bS21

Chain N

Small ribosomal subunit protein uS8

Chain R

30S ribosomal protein S12

Chain T

Small ribosomal subunit protein uS15

Chain V

Small ribosomal subunit protein uS17

Chain a

Large subunit ribosomal RNA; LSU rRNA