J4_9Y79_009

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

9Y79|1|a|G|1271, 9Y79|1|a|A|1272, 9Y79|1|a|U|1273, 9Y79|1|a|A|1275, 9Y79|1|a|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9Y79_009 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.1485

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_19484.1

Basepair signature

cWW-F-cWW-F-tSS-F-cWW-F-cWW

Number of instances in this motif group

8

Unit IDs

9Y79|1|a|C|1270
9Y79|1|a|G|1271
9Y79|1|a|A|1272
9Y79|1|a|U|1273
9Y79|1|a|A|1274
9Y79|1|a|A|1275
9Y79|1|a|A|1276
*
9Y79|1|a|U|1294
9Y79|1|a|C|1295
*
9Y79|1|a|G|1645
9Y79|1|a|C|1646
9Y79|1|a|U|1647
9Y79|1|a|U|1648
*
9Y79|1|a|A|2009
9Y79|1|a|G|2010

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain i

50S ribosomal protein L32

Chain w

Large ribosomal subunit protein bL17