J4_9Y79_014
3D structure
- PDB id
- 9Y79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 9Y79|1|a|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9Y79_014 not in the Motif Atlas
- Homologous match to J4_7A0S_009
- Geometric discrepancy: 0.304
- The information below is about J4_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9Y79|1|a|C|2285
9Y79|1|a|G|2286
9Y79|1|a|A|2287
9Y79|1|a|A|2288
9Y79|1|a|G|2289
*
9Y79|1|a|U|2343
9Y79|1|a|U|2344
9Y79|1|a|G|2345
9Y79|1|a|A|2346
9Y79|1|a|C|2347
*
9Y79|1|a|G|2370
9Y79|1|a|G|2371
9Y79|1|a|U|2372
*
9Y79|1|a|A|2381
9Y79|1|a|G|2382
9Y79|1|a|G|2383
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain b
- 50S ribosomal protein L27
- Chain k
- 50S ribosomal protein L33
- Chain o
- 50S ribosomal protein L35
- Chain x
- Large ribosomal subunit protein uL18
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