J5_1NKW_001

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AUG

Length

22 nucleotides

Bulged bases

1NKW|1|0|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1NKW_001 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.306

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

1NKW|1|0|C|46
1NKW|1|0|G|47
1NKW|1|0|A|48
1NKW|1|0|U|49
1NKW|1|0|G|50
1NKW|1|0|A|51
1NKW|1|0|A|52
1NKW|1|0|G|53
*
1NKW|1|0|C|114
1NKW|1|0|G|115
1NKW|1|0|A|116
1NKW|1|0|A|117
1NKW|1|0|U|118
1NKW|1|0|G|119
*
1NKW|1|0|C|128
1NKW|1|0|A|129
*
1NKW|1|0|U|142
1NKW|1|0|A|143
1NKW|1|0|U|144
*
1NKW|1|0|A|153
1NKW|1|0|U|154
1NKW|1|0|G|155

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain R

50S ribosomal protein L23