J5_1VY7_014
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CAG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 1VY7|1|DA|A|532, 1VY7|1|DA|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_1VY7_014 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.0612
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
1VY7|1|DA|C|531
1VY7|1|DA|A|532
1VY7|1|DA|G|533
*
1VY7|1|DA|C|560
1VY7|1|DA|G|561
1VY7|1|DA|U|562
1VY7|1|DA|G|563
1VY7|1|DA|C|564
*
1VY7|1|DA|G|577
1VY7|1|DA|A|578
1VY7|1|DA|G|579
*
1VY7|1|DA|C|1261
1VY7|1|DA|A|1262
*
1VY7|1|DA|U|2017
1VY7|1|DA|G|2018
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain D5
- 50S ribosomal protein L32
- Chain DF
- 50S ribosomal protein L4
- Chain DN
- 50S ribosomal protein L13
- Chain DU
- 50S ribosomal protein L20
- Chain DV
- 50S ribosomal protein L21
- Chain DW
- 50S ribosomal protein L22
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