J5_2J28_006
3D structure
- PDB id
- 2J28 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MODEL OF E. COLI SRP BOUND TO 70S RNCS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 2J28|1|B|U|2076, 2J28|1|B|G|2428, 2J28|1|B|G|2429, 2J28|1|B|A|2430, 2J28|1|B|U|2431
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_2J28_006 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0856
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
2J28|1|B|U|2074
2J28|1|B|U|2075
2J28|1|B|U|2076
2J28|1|B|A|2077
*
2J28|1|B|U|2243
2J28|1|B|U|2244
2J28|1|B|U|2245
2J28|1|B|G|2246
*
2J28|1|B|C|2258
2J28|1|B|U|2259
*
2J28|1|B|A|2281
2J28|1|B|G|2282
*
2J28|1|B|C|2427
2J28|1|B|G|2428
2J28|1|B|G|2429
2J28|1|B|A|2430
2J28|1|B|U|2431
2J28|1|B|A|2432
2J28|1|B|A|2433
2J28|1|B|A|2434
2J28|1|B|A|2435
Current chains
- Chain B
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 1
- 50S RIBOSOMAL PROTEIN L33
- Chain C
- 50S RIBOSOMAL PROTEIN L2
- Chain L
- 50S RIBOSOMAL PROTEIN L15
- Chain W
- 50S RIBOSOMAL PROTEIN L27
- Chain Z
- 50S RIBOSOMAL PROTEIN L31
Coloring options: