J5_2NR0_001

3D structure

PDB id

2NR0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GUGG*CG*UG*CUUA*UC

Length

14 nucleotides

Bulged bases

2NR0|1|E|U|8, 2NR0|1|E|G|9, 2NR0|1|E|U|47, 2NR0|1|E|U|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_2NR0_001 not in the Motif Atlas

Homologous match to J5_9QRP_001

Geometric discrepancy: 0.5814

The information below is about J5_9QRP_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_40900.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

3

Unit IDs

2NR0|1|E|G|7
2NR0|1|E|U|8
2NR0|1|E|G|9
2NR0|1|E|G|10
*
2NR0|1|E|C|25
2NR0|1|E|G|26
*
2NR0|1|E|U|44
2NR0|1|E|G|45|||A
*
2NR0|1|E|C|46|||L
2NR0|1|E|U|47
2NR0|1|E|U|48
2NR0|1|E|A|49
*
2NR0|1|E|U|65
2NR0|1|E|C|66

Current chains

Chain E

leucyl tRNA

Nearby chains

Chain A

tRNA pseudouridine synthase A