2NR0 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2NR0_001 | 1/E/12:23 | tRNA D-loop | geometric HL_2BTE_001 HL_68767.1 | |
| HL_2NR0_003 | 1/E/45D:46I | No text annotation | geometric HL_2Y8Y_001 HL_81100.2 | |
| HL_2NR0_004 | 1/E/53:61 | T-loop with 2 stacked bulged bases | geometric HL_5HR7_006 HL_28252.8 | |
| HL_2NR0_005 | 1/F/12:23 | No text annotation | ||
| HL_2NR0_006 | 1/F/31:39 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_2NR0_007 | 1/F/53:61 | T-loop with 2 stacked bulged bases | geometric HL_4RDX_003 HL_28252.8 | |
| HL_2NR0_008 | 1/G/12:23 | No text annotation | ||
| HL_2NR0_010 | 1/G/53:61 | T-loop with 2 stacked bulged bases | geometric HL_2BTE_004 HL_28252.8 | |
| HL_2NR0_011 | 1/H/12:23 | tRNA D-loop | geometric HL_3ZGZ_001 HL_68767.1 | |
| HL_2NR0_013 | 1/H/53:61 | T-loop with 2 stacked bulged bases | geometric HL_2BTE_004 HL_28252.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_2NR0_002 | No text annotation | ||
| HL_2NR0_014 | No text annotation | ||
| HL_2NR0_009 | No text annotation | ||
| HL_2NR0_012 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_2NR0_001 | Isolated non-canonical cWW contact | ||
| IL_2NR0_002 | Not an internal loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_2NR0_001 | 1/E/7:10, 1/E/25:26, 1/E/44:45, 1/E/46:49, 1/E/65:66 | No text annotation | ||
| J5_2NR0_002 | 1/F/7:10, 1/F/25:26, 1/F/44:45, 1/F/46:49, 1/F/65:66 | No text annotation | ||
| J5_2NR0_003 | 1/G/7:10, 1/G/25:26, 1/G/44:45, 1/G/46:49, 1/G/65:66 | No text annotation | ||
| J5_2NR0_004 | 1/H/7:10, 1/H/25:28, 1/H/42:45, 1/H/46:49, 1/H/65:66 | No text annotation |
Problematic loops
No problematic loops
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