J5_3DIR_001

3D structure

PDB id

3DIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystallization of the Thermotoga maritima lysine riboswitch bound to N6-1-iminoethyl-L-Lysine

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAGG*CGAA*UG*UGU*GAGAGC

Length

19 nucleotides

Bulged bases

3DIR|1|A|A|164

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3DIR|1|A|G|9
3DIR|1|A|A|10
3DIR|1|A|G|11
3DIR|1|A|G|12
*
3DIR|1|A|C|79
3DIR|1|A|G|80
3DIR|1|A|A|81
3DIR|1|A|A|82
*
3DIR|1|A|U|113
3DIR|1|A|G|114
*
3DIR|1|A|U|140
3DIR|1|A|G|141
3DIR|1|A|U|142
*
3DIR|1|A|G|161
3DIR|1|A|A|162
3DIR|1|A|G|163
3DIR|1|A|A|164
3DIR|1|A|G|165
3DIR|1|A|C|166

Current chains

Chain A

RNA (174-MER)

Nearby chains