3DIR Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3DIR_005 | 1/A/38:55 | No text annotation | geometric HL_3DIL_005 HL_10456.1 | |
| HL_3DIR_001 | 1/A/41:54 | No text annotation | geometric HL_3DIL_001 HL_20751.2 | |
| HL_3DIR_002 | 1/A/93:101 | Pseudoknot geometry | geometric HL_3DIL_002 HL_93324.4 | |
| HL_3DIR_003 | 1/A/124:130 | GNRA | geometric HL_3DIL_003 HL_30068.2 | |
| HL_3DIR_004 | 1/A/149:154 | No text annotation | geometric HL_3DIL_004 HL_78347.4 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3DIR_001 | 1/A/12:14, 1/A/78:79 | Single bulged C | geometric IL_3DIL_001 IL_61258.15 | |
| IL_3DIR_002 | 1/A/19:22, 1/A/70:73 | Double sheared | geometric IL_3DIL_002 IL_09705.15 | |
| IL_3DIR_003 | 1/A/22:30, 1/A/63:70 | 9x8 Sarcin-Ricin with GA cWW pair; G-bulge | geometric IL_3DIL_003 IL_34470.3 | |
| IL_3DIR_004 | 1/A/38:41, 1/A/54:55 | Major groove platform; stack outside cWW | geometric IL_3DIL_004 IL_50694.7 | |
| IL_3DIR_005 | 1/A/84:85, 1/A/109:111 | Single bulged G | geometric IL_3DIL_005 IL_00225.13 | |
| IL_3DIR_006 | 1/A/115:117, 1/A/137:139 | Isolated non-canonical cWW pair | geometric IL_3DIL_006 IL_87907.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_3DIR_001 | 1/A/9:12, 1/A/79:82, 1/A/113:114, 1/A/140:142, 1/A/161:166 | No text annotation |
Problematic loops
No problematic loops
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