J5_3J9M_001
3D structure
- PDB id
- 3J9M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human mitochondrial ribosome (class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAA*UAUAC*GAA*UA*UG
- Length
- 15 nucleotides
- Bulged bases
- 3J9M|1|A|A|1828, 3J9M|1|A|U|1843
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3J9M_001 not in the Motif Atlas
- Homologous match to J5_7A0S_003
- Geometric discrepancy: 0.1374
- The information below is about J5_7A0S_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
3J9M|1|A|C|1827
3J9M|1|A|A|1828
3J9M|1|A|A|1829
*
3J9M|1|A|U|1841
3J9M|1|A|A|1842
3J9M|1|A|U|1843
3J9M|1|A|A|1844
3J9M|1|A|C|1845
*
3J9M|1|A|G|1858
3J9M|1|A|A|1859
3J9M|1|A|A|1860
*
3J9M|1|A|U|2305
3J9M|1|A|A|2306
*
3J9M|1|A|U|2680
3J9M|1|A|G|2681
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain 0
- bL32m
- Chain F
- uL4m
- Chain R
- bL20m
- Chain S
- bL21m
- Chain T
- uL22m
- Chain a
- mL42
- Chain b
- mL43
Coloring options: