J5_3J9W_007
3D structure
- PDB id
- 3J9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 3J9W|1|BA|G|1787, 3J9W|1|BA|G|1792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3J9W_007 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.1521
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
3J9W|1|BA|G|1719
3J9W|1|BA|C|1720
3J9W|1|BA|A|1721
3J9W|1|BA|A|1722
3J9W|1|BA|A|1723
3J9W|1|BA|A|1724
3J9W|1|BA|U|1725
3J9W|1|BA|G|1726
3J9W|1|BA|A|1727
*
3J9W|1|BA|U|1751
3J9W|1|BA|G|1752
*
3J9W|1|BA|C|1780
3J9W|1|BA|C|1781
*
3J9W|1|BA|G|1785
3J9W|1|BA|U|1786
3J9W|1|BA|G|1787
3J9W|1|BA|A|1788
3J9W|1|BA|A|1789
3J9W|1|BA|U|1790
3J9W|1|BA|A|1791
3J9W|1|BA|G|1792
3J9W|1|BA|G|1793
*
3J9W|1|BA|C|2017
3J9W|1|BA|A|2018
3J9W|1|BA|C|2019
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BE
- 50S ribosomal protein uL3
- Chain BN
- 50S ribosomal protein uL14
- Chain BS
- 50S ribosomal protein bL19
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