J5_3J9W_009
3D structure
- PDB id
- 3J9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 3J9W|1|BA|U|2105, 3J9W|1|BA|G|2457, 3J9W|1|BA|G|2458, 3J9W|1|BA|A|2459, 3J9W|1|BA|U|2460
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3J9W_009 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.1401
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
3J9W|1|BA|U|2103
3J9W|1|BA|U|2104
3J9W|1|BA|U|2105
3J9W|1|BA|A|2106
*
3J9W|1|BA|U|2272
3J9W|1|BA|U|2273
3J9W|1|BA|U|2274
3J9W|1|BA|G|2275
*
3J9W|1|BA|C|2287
3J9W|1|BA|G|2288
*
3J9W|1|BA|C|2310
3J9W|1|BA|G|2311
*
3J9W|1|BA|C|2456
3J9W|1|BA|G|2457
3J9W|1|BA|G|2458
3J9W|1|BA|A|2459
3J9W|1|BA|U|2460
3J9W|1|BA|A|2461
3J9W|1|BA|A|2462
3J9W|1|BA|A|2463
3J9W|1|BA|A|2464
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B0
- 50S ribosomal protein bL28
- Chain B7
- 50S ribosomal protein bL35
- Chain BD
- 50S ribosomal protein uL2
- Chain BO
- 50S ribosomal protein uL15
- Chain BZ
- 50S ribosomal protein bL27
Coloring options: