J5_3J9Z_003
3D structure
- PDB id
- 3J9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 3J9Z|1|LA|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3J9Z_003 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.092
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
3J9Z|1|LA|C|584
3J9Z|1|LA|G|585
3J9Z|1|LA|A|586
3J9Z|1|LA|C|587
3J9Z|1|LA|U|588
3J9Z|1|LA|U|589
*
3J9Z|1|LA|A|668
3J9Z|1|LA|G|669
3J9Z|1|LA|A|670
3J9Z|1|LA|C|671
*
3J9Z|1|LA|G|809
3J9Z|1|LA|U|810
3J9Z|1|LA|U|811
3J9Z|1|LA|C|812
*
3J9Z|1|LA|G|1195
3J9Z|1|LA|C|1196
*
3J9Z|1|LA|G|1250
3J9Z|1|LA|C|1251
3J9Z|1|LA|G|1252
3J9Z|1|LA|A|1253
3J9Z|1|LA|A|1254
3J9Z|1|LA|U|1255
3J9Z|1|LA|G|1256
Current chains
- Chain LA
- 23S ribosomal RNA
Nearby chains
- Chain L4
- 50S ribosomal protein L35
- Chain L6
- 50S ribosomal protein L4
- Chain LH
- 50S ribosomal protein L15
- Chain LO
- 50S ribosomal protein L20
- Chain LP
- 50S ribosomal protein L21
Coloring options: