J5_3JA1_003
3D structure
- PDB id
- 3JA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 3JA1|1|LA|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3JA1_003 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.1557
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
3JA1|1|LA|C|584
3JA1|1|LA|G|585
3JA1|1|LA|A|586
3JA1|1|LA|C|587
3JA1|1|LA|U|588
3JA1|1|LA|U|589
*
3JA1|1|LA|A|668
3JA1|1|LA|G|669
3JA1|1|LA|A|670
3JA1|1|LA|C|671
*
3JA1|1|LA|G|809
3JA1|1|LA|U|810
3JA1|1|LA|U|811
3JA1|1|LA|C|812
*
3JA1|1|LA|G|1195
3JA1|1|LA|C|1196
*
3JA1|1|LA|G|1250
3JA1|1|LA|C|1251
3JA1|1|LA|G|1252
3JA1|1|LA|A|1253
3JA1|1|LA|A|1254
3JA1|1|LA|U|1255
3JA1|1|LA|G|1256
Current chains
- Chain LA
- 23S ribosomal RNA
Nearby chains
- Chain L6
- 50S ribosomal protein L35
- Chain LF
- 50S ribosomal protein L4
- Chain LN
- 50S ribosomal protein L15
- Chain LS
- 50S ribosomal protein L20
- Chain LT
- 50S ribosomal protein L21
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