3D structure

PDB id
3JA1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CGACUU*AGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
3JA1|1|LA|U|1255
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_3JA1_003 not in the Motif Atlas
Homologous match to J5_5J7L_015
Geometric discrepancy: 0.1557
The information below is about J5_5J7L_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

3JA1|1|LA|C|584
3JA1|1|LA|G|585
3JA1|1|LA|A|586
3JA1|1|LA|C|587
3JA1|1|LA|U|588
3JA1|1|LA|U|589
*
3JA1|1|LA|A|668
3JA1|1|LA|G|669
3JA1|1|LA|A|670
3JA1|1|LA|C|671
*
3JA1|1|LA|G|809
3JA1|1|LA|U|810
3JA1|1|LA|U|811
3JA1|1|LA|C|812
*
3JA1|1|LA|G|1195
3JA1|1|LA|C|1196
*
3JA1|1|LA|G|1250
3JA1|1|LA|C|1251
3JA1|1|LA|G|1252
3JA1|1|LA|A|1253
3JA1|1|LA|A|1254
3JA1|1|LA|U|1255
3JA1|1|LA|G|1256

Current chains

Chain LA
23S ribosomal RNA

Nearby chains

Chain L6
50S ribosomal protein L35
Chain LF
50S ribosomal protein L4
Chain LN
50S ribosomal protein L15
Chain LS
50S ribosomal protein L20
Chain LT
50S ribosomal protein L21

Coloring options:


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