J5_3JBP_001
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 3JBP|1|A|A|551
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3JBP_001 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.1148
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
3JBP|1|A|C|31
3JBP|1|A|U|32
3JBP|1|A|U|33
3JBP|1|A|G|34
3JBP|1|A|U|35
*
3JBP|1|A|A|479
3JBP|1|A|A|480
3JBP|1|A|A|481
3JBP|1|A|U|482
3JBP|1|A|A|483
3JBP|1|A|A|484
3JBP|1|A|C|485
*
3JBP|1|A|G|516
3JBP|1|A|G|517
3JBP|1|A|A|518
3JBP|1|A|A|519
3JBP|1|A|U|520
3JBP|1|A|G|521
*
3JBP|1|A|C|550
3JBP|1|A|A|551
3JBP|1|A|A|552
3JBP|1|A|U|553
*
3JBP|1|A|A|599
3JBP|1|A|U|600
3JBP|1|A|A|601
3JBP|1|A|G|602
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 6
- 40S ribosomal protein eS30
- Chain E
- 40S ribosomal protein uS4
- Chain Q
- 40S ribosomal protein uS12
Coloring options: