J5_3JBU_003

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

3JBU|1|b|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3JBU_003 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.1689

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3JBU|1|b|C|47
3JBU|1|b|G|48
3JBU|1|b|A|49
3JBU|1|b|U|50
3JBU|1|b|G|51
3JBU|1|b|A|52
3JBU|1|b|A|53
3JBU|1|b|G|54
*
3JBU|1|b|C|116
3JBU|1|b|G|117
3JBU|1|b|A|118
3JBU|1|b|A|119
3JBU|1|b|U|120
3JBU|1|b|G|121
*
3JBU|1|b|C|130
3JBU|1|b|A|131
*
3JBU|1|b|U|148
3JBU|1|b|A|149
3JBU|1|b|U|150
*
3JBU|1|b|A|176
3JBU|1|b|G|177
3JBU|1|b|G|178

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34