J5_3JBU_008
3D structure
- PDB id
- 3JBU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.64 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 3JBU|1|b|U|2076, 3JBU|1|b|G|2428, 3JBU|1|b|G|2429
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3JBU_008 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.1391
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
3JBU|1|b|U|2074
3JBU|1|b|U|2075
3JBU|1|b|U|2076
3JBU|1|b|A|2077
*
3JBU|1|b|U|2243
3JBU|1|b|U|2244
3JBU|1|b|U|2245
3JBU|1|b|G|2246
*
3JBU|1|b|C|2258
3JBU|1|b|U|2259
*
3JBU|1|b|A|2281
3JBU|1|b|G|2282
*
3JBU|1|b|C|2427
3JBU|1|b|G|2428
3JBU|1|b|G|2429
3JBU|1|b|A|2430
3JBU|1|b|U|2431
3JBU|1|b|A|2432
3JBU|1|b|A|2433
3JBU|1|b|A|2434
3JBU|1|b|A|2435
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L28
- Chain 4
- 50S ribosomal protein L33
- Chain 7
- 50S ribosomal protein L35
- Chain c
- 50S ribosomal protein L2
- Chain l
- 50S ribosomal protein L15
- Chain y
- 50S ribosomal protein L27
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