J5_3JBV_004

3D structure

PDB id

3JBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.32 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

3JBV|1|b|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3JBV_004 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.1575

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

3JBV|1|b|C|47
3JBV|1|b|G|48
3JBV|1|b|A|49
3JBV|1|b|U|50
3JBV|1|b|G|51
3JBV|1|b|A|52
3JBV|1|b|A|53
3JBV|1|b|G|54
*
3JBV|1|b|C|116
3JBV|1|b|G|117
3JBV|1|b|A|118
3JBV|1|b|A|119
3JBV|1|b|U|120
3JBV|1|b|G|121
*
3JBV|1|b|C|130
3JBV|1|b|A|131
*
3JBV|1|b|U|148
3JBV|1|b|A|149
3JBV|1|b|U|150
*
3JBV|1|b|A|176
3JBV|1|b|G|177
3JBV|1|b|G|178

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 6

50S ribosomal protein L34