3D structure

PDB id
3JCE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGACUU*AGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
3JCE|1|A|U|1255
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_3JCE_012 not in the Motif Atlas
Homologous match to J5_5J7L_015
Geometric discrepancy: 0.0814
The information below is about J5_5J7L_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

3JCE|1|A|C|584
3JCE|1|A|G|585
3JCE|1|A|A|586
3JCE|1|A|C|587
3JCE|1|A|U|588
3JCE|1|A|U|589
*
3JCE|1|A|A|668
3JCE|1|A|G|669
3JCE|1|A|A|670
3JCE|1|A|C|671
*
3JCE|1|A|G|809
3JCE|1|A|U|810
3JCE|1|A|U|811
3JCE|1|A|C|812
*
3JCE|1|A|G|1195
3JCE|1|A|C|1196
*
3JCE|1|A|G|1250
3JCE|1|A|C|1251
3JCE|1|A|G|1252
3JCE|1|A|A|1253
3JCE|1|A|A|1254
3JCE|1|A|U|1255
3JCE|1|A|G|1256

Current chains

Chain A
23 ribosomal RNA

Nearby chains

Chain 3
50S ribosomal protein L35
Chain E
50S ribosomal protein L4
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21

Coloring options:


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