J5_3PIO_002
3D structure
- PDB id
- 3PIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- CAG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 3PIO|1|X|A|542, 3PIO|1|X|U|571
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3PIO_002 not in the Motif Atlas
- Homologous match to J5_7A0S_003
- Geometric discrepancy: 0.0533
- The information below is about J5_7A0S_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
3PIO|1|X|C|541
3PIO|1|X|A|542
3PIO|1|X|G|543
*
3PIO|1|X|C|569
3PIO|1|X|G|570
3PIO|1|X|U|571
3PIO|1|X|G|572
3PIO|1|X|C|573
*
3PIO|1|X|G|586
3PIO|1|X|A|587
3PIO|1|X|G|588
*
3PIO|1|X|C|1274
3PIO|1|X|A|1275
*
3PIO|1|X|U|2000
3PIO|1|X|G|2001
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain N
- 50S ribosomal protein L20
- Chain O
- 50S ribosomal protein L21
- Chain P
- 50S ribosomal protein L22
- Chain Z
- 50S ribosomal protein L32
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