J5_4CSU_001

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

4CSU|1|B|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4CSU_001 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.1564

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4CSU|1|B|C|47
4CSU|1|B|G|48
4CSU|1|B|A|49
4CSU|1|B|U|50
4CSU|1|B|G|51
4CSU|1|B|A|52
4CSU|1|B|A|53
4CSU|1|B|G|54
*
4CSU|1|B|C|116
4CSU|1|B|G|117
4CSU|1|B|A|118
4CSU|1|B|A|119
4CSU|1|B|U|120
4CSU|1|B|G|121
*
4CSU|1|B|C|130
4CSU|1|B|A|131
*
4CSU|1|B|U|148
4CSU|1|B|A|149
4CSU|1|B|U|150
*
4CSU|1|B|A|176
4CSU|1|B|G|177
4CSU|1|B|G|178

Current chains

Chain B

23S RRNA

Nearby chains

Chain 6

50S RIBOSOMAL PROTEIN L34