J5_4TUB_003
3D structure
- PDB id
- 4TUB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CG*CAC*GGG
- Length
- 22 nucleotides
- Bulged bases
- 4TUB|1|RA|U|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4TUB_003 not in the Motif Atlas
- Homologous match to J5_9DFE_001
- Geometric discrepancy: 0.0822
- The information below is about J5_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4TUB|1|RA|C|46
4TUB|1|RA|G|47
4TUB|1|RA|A|48
4TUB|1|RA|U|49
4TUB|1|RA|G|50
4TUB|1|RA|A|51
4TUB|1|RA|A|52
4TUB|1|RA|G|53
*
4TUB|1|RA|C|114
4TUB|1|RA|G|115
4TUB|1|RA|A|116
4TUB|1|RA|A|117
4TUB|1|RA|U|118
4TUB|1|RA|G|119
*
4TUB|1|RA|C|128
4TUB|1|RA|G|129
*
4TUB|1|RA|C|148
4TUB|1|RA|A|149
4TUB|1|RA|C|150
*
4TUB|1|RA|G|165
4TUB|1|RA|G|166
4TUB|1|RA|G|167
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R7
- 50S ribosomal protein L34
- Chain RX
- 50S ribosomal protein L23
Coloring options: