J5_4UY8_006
3D structure
- PDB id
- 4UY8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 4UY8|1|A|U|2076, 4UY8|1|A|G|2428, 4UY8|1|A|G|2429, 4UY8|1|A|A|2430, 4UY8|1|A|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4UY8_006 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0737
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4UY8|1|A|U|2074
4UY8|1|A|U|2075
4UY8|1|A|U|2076
4UY8|1|A|A|2077
*
4UY8|1|A|U|2243
4UY8|1|A|U|2244
4UY8|1|A|U|2245
4UY8|1|A|G|2246
*
4UY8|1|A|C|2258
4UY8|1|A|U|2259
*
4UY8|1|A|A|2281
4UY8|1|A|G|2282
*
4UY8|1|A|C|2427
4UY8|1|A|G|2428
4UY8|1|A|G|2429
4UY8|1|A|A|2430
4UY8|1|A|U|2431
4UY8|1|A|A|2432
4UY8|1|A|A|2433
4UY8|1|A|A|2434
4UY8|1|A|A|2435
Current chains
- Chain A
- RRNA-23S RIBOSOMAL RNA
Nearby chains
- Chain 1
- 50S RIBOSOMAL PROTEIN L33
- Chain 3
- 50S RIBOSOMAL PROTEIN L35
- Chain C
- 50S RIBOSOMAL PROTEIN L2
- Chain L
- 50S RIBOSOMAL PROTEIN L15
- Chain W
- 50S RIBOSOMAL PROTEIN L27
- Chain X
- 50S RIBOSOMAL PROTEIN L28
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