J5_4V68_005
3D structure
- PDB id
- 4V68 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.4 Å
Loop
- Sequence
- CAG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 4V68|1|BA|A|532, 4V68|1|BA|U|562
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V68_005 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.0866
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V68|1|BA|C|531
4V68|1|BA|A|532
4V68|1|BA|G|533
*
4V68|1|BA|C|560
4V68|1|BA|G|561
4V68|1|BA|U|562
4V68|1|BA|G|563
4V68|1|BA|C|564
*
4V68|1|BA|G|577
4V68|1|BA|A|578
4V68|1|BA|G|579
*
4V68|1|BA|C|1261
4V68|1|BA|A|1262
*
4V68|1|BA|U|2017
4V68|1|BA|G|2018
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain B5
- 50S ribosomal protein L32
- Chain BF
- 50S ribosomal protein L4
- Chain BN
- 50S ribosomal protein L13
- Chain BU
- 50S ribosomal protein L20
- Chain BV
- 50S ribosomal protein L21
- Chain BW
- 50S ribosomal protein L22
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