J5_4V6O_005
3D structure
- PDB id
- 4V6O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 14.7 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 4V6O|1|BB|A|532, 4V6O|1|BB|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V6O_005 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.2448
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V6O|1|BB|C|531
4V6O|1|BB|A|532
4V6O|1|BB|G|533
*
4V6O|1|BB|C|560
4V6O|1|BB|G|561
4V6O|1|BB|U|562
4V6O|1|BB|A|563
4V6O|1|BB|C|564
*
4V6O|1|BB|G|577
4V6O|1|BB|G|578
4V6O|1|BB|G|579
*
4V6O|1|BB|C|1261
4V6O|1|BB|A|1262
*
4V6O|1|BB|U|2017
4V6O|1|BB|G|2018
Current chains
- Chain BB
- 23S ribomosomal RNA
Nearby chains
- Chain B3
- 50S ribosomal protein L32
- Chain BF
- 50S ribosomal protein L4
- Chain BL
- 50S ribosomal protein L13
- Chain BN
- 50S ribosomal protein L15
- Chain BS
- 50S ribosomal protein L20
- Chain BT
- 50S ribosomal protein L21
- Chain BU
- 50S ribosomal protein L22
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