J5_4V6Q_009
3D structure
- PDB id
- 4V6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 11.5 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 4V6Q|1|BB|U|2076, 4V6Q|1|BB|G|2428, 4V6Q|1|BB|G|2429, 4V6Q|1|BB|A|2430, 4V6Q|1|BB|U|2431
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V6Q_009 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.2574
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V6Q|1|BB|U|2074
4V6Q|1|BB|U|2075
4V6Q|1|BB|U|2076
4V6Q|1|BB|A|2077
*
4V6Q|1|BB|U|2243
4V6Q|1|BB|U|2244
4V6Q|1|BB|U|2245
4V6Q|1|BB|G|2246
*
4V6Q|1|BB|C|2258
4V6Q|1|BB|U|2259
*
4V6Q|1|BB|A|2281
4V6Q|1|BB|G|2282
*
4V6Q|1|BB|C|2427
4V6Q|1|BB|G|2428
4V6Q|1|BB|G|2429
4V6Q|1|BB|A|2430
4V6Q|1|BB|U|2431
4V6Q|1|BB|A|2432
4V6Q|1|BB|A|2433
4V6Q|1|BB|A|2434
4V6Q|1|BB|A|2435
Current chains
- Chain BB
- 23S ribomosomal RNA
Nearby chains
- Chain AD
- Transfer RNA; tRNA
- Chain B4
- 50S ribosomal protein L33
- Chain BD
- 50S ribosomal protein L2
- Chain BN
- 50S ribosomal protein L15
- Chain BY
- 50S ribosomal protein L27
- Chain BZ
- 50S ribosomal protein L28
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