J5_4V6R_007
3D structure
- PDB id
- 4V6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 11.5 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 4V6R|1|BB|C|1675, 4V6R|1|BB|U|1758, 4V6R|1|BB|A|1762, 4V6R|1|BB|G|1763
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V6R_007 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.5107
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
4V6R|1|BB|G|1674
4V6R|1|BB|C|1675
4V6R|1|BB|A|1676
4V6R|1|BB|A|1677
4V6R|1|BB|A|1678
4V6R|1|BB|A|1679
4V6R|1|BB|U|1680
4V6R|1|BB|G|1681
4V6R|1|BB|G|1682
*
4V6R|1|BB|C|1706
4V6R|1|BB|G|1707
*
4V6R|1|BB|U|1751
4V6R|1|BB|C|1752
*
4V6R|1|BB|G|1756
4V6R|1|BB|A|1757
4V6R|1|BB|U|1758
4V6R|1|BB|A|1759
4V6R|1|BB|C|1760
4V6R|1|BB|C|1761
4V6R|1|BB|A|1762
4V6R|1|BB|G|1763
4V6R|1|BB|C|1764
*
4V6R|1|BB|G|1988
4V6R|1|BB|G|1989
4V6R|1|BB|C|1990
Current chains
- Chain BB
- 23S ribomosomal RNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BE
- 50S ribosomal protein L3
- Chain BM
- 50S ribosomal protein L14
- Chain BR
- 50S ribosomal protein L19
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