3D structure

PDB id
4V6T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
Experimental method
ELECTRON MICROSCOPY
Resolution
8.3 Å

Loop

Sequence
CGACUU*AGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
4V6T|1|BA|U|1255
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4V6T_006 not in the Motif Atlas
Homologous match to J5_5J7L_015
Geometric discrepancy: 0.0488
The information below is about J5_5J7L_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

4V6T|1|BA|C|584
4V6T|1|BA|G|585
4V6T|1|BA|A|586
4V6T|1|BA|C|587
4V6T|1|BA|U|588
4V6T|1|BA|U|589
*
4V6T|1|BA|A|668
4V6T|1|BA|G|669
4V6T|1|BA|A|670
4V6T|1|BA|C|671
*
4V6T|1|BA|G|809
4V6T|1|BA|U|810
4V6T|1|BA|U|811
4V6T|1|BA|C|812
*
4V6T|1|BA|G|1195
4V6T|1|BA|C|1196
*
4V6T|1|BA|G|1250
4V6T|1|BA|C|1251
4V6T|1|BA|G|1252
4V6T|1|BA|A|1253
4V6T|1|BA|A|1254
4V6T|1|BA|U|1255
4V6T|1|BA|G|1256

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B3
50S ribosomal protein L35
Chain BE
50S ribosomal protein L4
Chain BL
50S ribosomal protein L15
Chain BQ
50S ribosomal protein L20
Chain BR
50S ribosomal protein L21

Coloring options:


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