3D structure

PDB id
4V76 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)
Experimental method
ELECTRON MICROSCOPY
Resolution
17 Å

Loop

Sequence
CAG*CGUAC*GGG*CA*UG
Length
15 nucleotides
Bulged bases
4V76|1|BA|A|532, 4V76|1|BA|U|562
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4V76_005 not in the Motif Atlas
Homologous match to J5_7A0S_003
Geometric discrepancy: 0.315
The information below is about J5_7A0S_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_43153.5
Basepair signature
cWW-cWW-cWW-F-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

4V76|1|BA|C|531
4V76|1|BA|A|532
4V76|1|BA|G|533
*
4V76|1|BA|C|560
4V76|1|BA|G|561
4V76|1|BA|U|562
4V76|1|BA|A|563
4V76|1|BA|C|564
*
4V76|1|BA|G|577
4V76|1|BA|G|578
4V76|1|BA|G|579
*
4V76|1|BA|C|1261
4V76|1|BA|A|1262
*
4V76|1|BA|U|2017
4V76|1|BA|G|2018

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B0
50S ribosomal protein L32
Chain BQ
50S ribosomal protein L20
Chain BR
50S ribosomal protein L21
Chain BS
50S ribosomal protein L22

Coloring options:


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