J5_4V7D_010

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

UUUA*UUUG*CU*AG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

4V7D|1|AA|U|2076, 4V7D|1|AA|G|2428, 4V7D|1|AA|G|2429, 4V7D|1|AA|A|2430

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V7D_010 not in the Motif Atlas

Homologous match to J5_4WF9_007

Geometric discrepancy: 0.1225

The information below is about J5_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.1

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4V7D|1|AA|U|2074
4V7D|1|AA|U|2075
4V7D|1|AA|U|2076
4V7D|1|AA|A|2077
*
4V7D|1|AA|U|2243
4V7D|1|AA|U|2244
4V7D|1|AA|U|2245
4V7D|1|AA|G|2246
*
4V7D|1|AA|C|2258
4V7D|1|AA|U|2259
*
4V7D|1|AA|A|2281
4V7D|1|AA|G|2282
*
4V7D|1|AA|C|2427
4V7D|1|AA|G|2428
4V7D|1|AA|G|2429
4V7D|1|AA|A|2430
4V7D|1|AA|U|2431
4V7D|1|AA|A|2432
4V7D|1|AA|A|2433
4V7D|1|AA|A|2434
4V7D|1|AA|A|2435

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L28

Chain A5

50S ribosomal protein L33

Chain A7

50S ribosomal protein L35

Chain AD

50S ribosomal protein L2

Chain AO

50S ribosomal protein L15

Chain AZ

50S ribosomal protein L27

Chain BW

Transfer RNA; tRNA