J5_4V7J_010

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V7J|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V7J_010 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.057

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V7J|1|BA|C|47
4V7J|1|BA|G|48
4V7J|1|BA|A|49
4V7J|1|BA|U|50
4V7J|1|BA|G|51
4V7J|1|BA|A|52
4V7J|1|BA|A|53
4V7J|1|BA|G|54
*
4V7J|1|BA|C|116
4V7J|1|BA|G|117
4V7J|1|BA|A|118
4V7J|1|BA|A|119
4V7J|1|BA|U|120
4V7J|1|BA|G|121
*
4V7J|1|BA|C|130
4V7J|1|BA|G|131
*
4V7J|1|BA|C|148
4V7J|1|BA|A|149
4V7J|1|BA|C|150
*
4V7J|1|BA|G|176
4V7J|1|BA|G|177
4V7J|1|BA|G|178

Current chains

Chain BA

RNA (2848-MER)

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BX

50S ribosomal protein L23