J5_4V9I_010

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4V9I|1|CA|A|103, 4V9I|1|CA|C|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V9I_010 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0612

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V9I|1|CA|C|59
4V9I|1|CA|A|60
4V9I|1|CA|A|61
4V9I|1|CA|G|62
*
4V9I|1|CA|C|100
4V9I|1|CA|G|101
4V9I|1|CA|G|102
4V9I|1|CA|A|103
4V9I|1|CA|C|104
4V9I|1|CA|G|105
4V9I|1|CA|G|106
4V9I|1|CA|G|107
*
4V9I|1|CA|C|310
4V9I|1|CA|A|311
4V9I|1|CA|G|312
*
4V9I|1|CA|C|333
4V9I|1|CA|A|334
4V9I|1|CA|C|335
*
4V9I|1|CA|G|346
4V9I|1|CA|G|347
4V9I|1|CA|C|348
4V9I|1|CA|A|349
4V9I|1|CA|G|350

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CP

30S Ribosomal protein S16

Chain CT

30S Ribosomal protein S20

Chain DO

50S ribosomal protein L14