J5_4V9I_012
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CAG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 4V9I|1|DA|A|556, 4V9I|1|DA|U|584
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V9I_012 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.0794
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V9I|1|DA|C|555
4V9I|1|DA|A|556
4V9I|1|DA|G|557
*
4V9I|1|DA|C|582
4V9I|1|DA|G|583
4V9I|1|DA|U|584
4V9I|1|DA|G|585
4V9I|1|DA|C|586
*
4V9I|1|DA|G|599
4V9I|1|DA|A|600
4V9I|1|DA|G|601
*
4V9I|1|DA|C|1306
4V9I|1|DA|A|1307
*
4V9I|1|DA|U|2038
4V9I|1|DA|G|2039
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain D5
- 50S ribosomal protein L32
- Chain DF
- 50S ribosomal protein L4
- Chain DU
- 50S ribosomal protein L20
- Chain DV
- 50S ribosomal protein L21
- Chain DW
- 50S ribosomal protein L22
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