3D structure

PDB id
4W29 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
CAG*CGUGC*GAG*CA*UG
Length
15 nucleotides
Bulged bases
4W29|1|DA|A|532, 4W29|1|DA|U|562
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4W29_014 not in the Motif Atlas
Homologous match to J5_9DFE_003
Geometric discrepancy: 0.2021
The information below is about J5_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_43153.6
Basepair signature
cWW-cWW-cWW-F-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

4W29|1|DA|C|531
4W29|1|DA|A|532
4W29|1|DA|G|533
*
4W29|1|DA|C|560
4W29|1|DA|G|561
4W29|1|DA|U|562
4W29|1|DA|G|563
4W29|1|DA|C|564
*
4W29|1|DA|G|577
4W29|1|DA|A|578
4W29|1|DA|G|579
*
4W29|1|DA|C|1261
4W29|1|DA|A|1262
*
4W29|1|DA|U|2017
4W29|1|DA|G|2018

Current chains

Chain DA
23S Ribosomal RNA

Nearby chains

Chain D5
50S ribosomal protein L32
Chain DF
50S ribosomal protein L4
Chain DN
50S ribosomal protein L13
Chain DU
50S ribosomal protein L20
Chain DV
50S ribosomal protein L21
Chain DW
50S ribosomal protein L22

Coloring options:


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